species:   Bodot
pid:       PID1113
parent:    Bd-milR58
paralog:   
locus:     MU009150.1:3098737-3098805
matures:   ['GCAGGAAUGAUAGACUCAAGC', 'CGGAAGCCUGUCAUUCCUGGAG']
srr:       SRR8374849
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374849.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374849.cram MU009150.1:3098737-3098805

1 out of bounds
5 alignments
5 proper strand
2 stranded perfect matches

        ************************    ***********************          
GAGUGCCUGCCGGAAGCCUGUCAUUCCUGGAGAUACCAGCAGGAAUGAUAGACUCAAGCACGGGCACGU
..((((((((..((.(.((((((((((((..(....)..)))))))))))).)))..))..))))))..
--------------------------------------GCAGGAAUGAUAGACUCAAGC---------- l=21 a=1 c
----------CGGAAGCCUGUCAUUCCUGGAG------------------------------------- l=22 a=0 c*
--------------------------------------GCAGGAAUGAUAGACUCAAGC---------- l=21 a=1 ma
----------CGGAAGCCUGUCAUUCCUGGAG------------------------------------- l=22 a=0 ma*

--------------------------------------GCAGGAAUGAUAGACUCAAGC---------- l=21 a=1 (c,ma)
--------------------------------------GCAGGAAUGAUAGACUCAAGCACGGGCAu-- l=29 a=2 
---------------------------------------CAGGAAUGAUAGACUCAAGCACGGa----- l=25 a=1 
-------------------------------------------AAUGAUAGACUCAAGCACGGGC---- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-100111101100
fn-111
